PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00088-augustus-gene-1.42-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 359aa    MW: 39439.8 Da    PI: 9.0137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00088-augustus-gene-1.42-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.3e-13220246127
                                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                                    +++++C+f+++tG CkyG+ C+F+H++
  maker-scaffold00088-augustus-gene-1.42-mRNA-1 220 PGQPECQFYMKTGDCKYGAVCRFHHPR 246
                                                    5789*********************96 PP

2zf-CCCH40.54.6e-13266292127
                                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                                    ++++lC f++r+G+Ck+G++CkF H++
  maker-scaffold00088-augustus-gene-1.42-mRNA-1 266 PGEPLCIFYSRYGICKFGPSCKFDHPM 292
                                                    589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.1E-6219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596219247IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6223249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5225247IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709265293IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10267292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4270290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMVSLNGSTV YPTVQSPTTP GQQSYAGGIT NWSRASFIPS PRWQGPSSYA PLLLHQGMVS  60
VPGWNAYGAL LGNLRVSFRK RKEGEGRQGR LYIDAGTTLM DKKAWVELKS FFVSRLSLHL  120
KPSESWLWMM SNAVVDWLPV VRRCWWWYLG ALIVEVGQLG SVSSSETQQQ TVANSQIYGT  180
SRQGESTSAG SQGTFSPFRS GSVPVGFYAL QRENVFPERP GQPECQFYMK TGDCKYGAVC  240
RFHHPRERLI PAPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFAYNIS  300
ASSSADAPVR RLLGSSSGTA ALNLSSEGLV DAGLAKPRRL SLSESRQMPS GDDNIDTEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218439.11e-126PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-111ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLB9RFV81e-124B9RFV8_RICCO; Nucleic acid binding protein, putative
TrEMBLM5VZ661e-124M5VZ66_PRUPE; Uncharacterized protein
STRINGPOPTR_0019s08030.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.35e-62zinc finger nuclease 3